This comprehensive, hands-on course provides training on the bioinformatics of gene expression analysis, focusing on bulk RNA-sequencing data using R, R Studio, and various R packages. Additionally, the course introduces foundational concepts of single-cell RNA-seq analysis. All instructors are practicing bioinformaticians and lecturers at training courses of NGO Genomics UA. Each session includes an introductory lecture followed by a practical tutorial. During tutorials, students will engage live in data analysis under the guidance of an instructor and participate in interactive assessments.
The course begins with an R boot camp to introduce newcomers to the R programming language and R Studio, while also serving as a refresher for those already familiar with R. Next, the basics of expression analysis, advanced R techniques, differential expression analysis using DESeq2, data visualization, functional analysis, and single-cell expression analysis are discussed. A final assessment in the form of multiple-choice questions will conclude the course, requiring a minimum pass rate of 70% on each test for successful completion. Besides, the course features a team project where groups of 2-3 students analyze expression data from a publicly available dataset, starting from a count matrix. Two final sessions focus on student presentations and feedback from the instructors. These mini-projects are not graded but successful teams will receive additional certificates from NGO Genomics UA, signed by the instructors.
All instruction will be delivered in Ukrainian, but as the bioinformatics packages are documented in English and the field uses established English terminology, the necessary background will be provided in each session.
The course consists of 30 classes. For classes, students will be divided into 2 groups.
All classes will be given in Ukrainian.
Scholarship: 25 scholarships of 200 euros. For students from families affected by the war. Funding conditions require successful completion of the course.
Registration: to July 23, 2024
After the end of registration, everyone who sent an application will receive a letter to their e-mail with a notification about registration/rejection.